Next to each TRU there is a putative 25 nt recombinase recognition sequence [ACTTT(T/C)TCT(G/C)TTTGATAATT(C/A)AAAT].

The same recognition site is located next to some non-TRU genes in the loci, therefore making them likely to be involved in this phase variable superfamily. Furthermore, serovar 13 has a non-TRU variable domain fused to the conserved domain of the mba, confirming that the variable unit does not necessarily require tandem repeats. An interesting observation is that UUR4, 12 and 13 have the same mba locus composition in 3 different rearrangements (Figure  8). Most TRUs were found to be Selleckchem EX527 present in more than one serovar. By carefully analyzing small contigs in unfinished ureaplasma genomes, we identified variations of the mba loci. For example, on a small contig of UUR8 gcontig_1118434609926 [GenBank: PLX3397 NZ_AAYN02000001] we saw a partial mba locus arranged alternatively by duplicating one of the TRUs in the locus. Examining the sequencing and assembly data of such contigs confirms that these contigs are not misassembled, but rather represent a subpopulation of the sequenced culture. The proposed mechanism for variation

of the ureaplasma mba locus resembles the previously reported variable loci of Mycoplasma bovis: vsp, Mycoplasma pulmonis: selleck chemical vsa and Mycoplasma agalactiae: vpma[56]. The involvement of a site-specific Xer-like recombinase and inverted repeats was experimentally proven for the M. pulmonis vsa locus [57] and the vpma locus of M. agalactiae[58], and suggested for the phase variation of the vsp locus in M. bovis[56]. We believe that a Xer-like recombinase is likely to be involved in the phase variation of the mba locus of Ureaplasma spp and a putative recombinase recognition site has been determined. The mba locus resembles the M. pulmonis vsa locus in that it has only one promoter and one conserved domain per

mba locus, which needs to be moved in front of a variable domain to make a functional surface MBA. Figure 8 The MBA Locus in Isotretinoin UUR4, UUR12, and UUR13. Genes in each genome are represented as directional blue or green boxes. Orthologous gene clusters (COGs) are represented by gray or pink bands spanning across the tree genomes. The COG with a pink band represents the first mba gene in the MBA locus. The locus includes the next 4 genes following the gene in the pink labeled COG (all tree genome have 5 mba genes each). The conserved domain of the mba is marked by a red box. Rearrangements of the genes are visible by following the twisting of the connecting bands. Examination of the mba loci of the four sequenced UUR clinical isolates that cannot be assigned to a serovar shows that the mba conserved domain is UUR specific. Due to the repetitive nature of the mba TRUs the loci are broken into multiple contigs, making it impossible to determine the exact order of the genes in the mba loci without further sequencing. Isolate 2033 had 4 identifiable TRUs (mba333bp, mba213bp.