The color of the lettering is decided by the size of the genome. Twelve distinct colors were used with each assigned to a genome size range. The lightest color

was used for genomes up to 1 MB. Subsequently, colors were assigned to genome size ranges in increments of 0.5 MB. Genomes larger than 6 MB were all colored green. This figure shows the upper quartile, for the full image please see Additional file 2. These observations are illustrated in Figure 3, which is excerpted from Figure 1 and shows a portion of the γ-Proteobacteria. Here one sees that for a large number of enterics (Escherichia, Salmonella, Yersinia etc) the operon number is typically seven with only occasional strains, having six or eight operons. Related genera such as Mannheimia and Haemophilus typically have 5 or 6 operons. However, Candidatus biochmannia

and Buchnera strains have only one operon. The difference here is Wnt inhibitor genome size. These organisms all have genomes less than 1 MB. The predictions are of course not perfect, and one will see occasional exceptions. Thus, in Figure 1, one Actinobacillus strain only has three operons while all of the other close neighbors have six. Figure 3 Excerpt from Figure 1 showing a portion of the γ-Proteobacteria as discussed in the text. Coloring is as in Figure 1. www.selleckchem.com/products/dibutyryl-camp-bucladesine.html Discussion The fact that members of the same species generally have essentially the same number of rRNA operons Duvelisib supplier has been pointed out previously [6]. However, in the absence of the type of mapping shown here the phylogenetic extent to which this is true is not readily recognized. Initial mapping efforts [7] were not fully informative in this regard due to the modest number of species for which the requisite information was available at the time. Prior work has shown that rRNA copy number impacts OSBPL9 organism life history [7, 10]. This suggests that gain or loss of rRNA operons would appear to be a potential method of adapting to different environments and

one might envision numerous individual organisms in populations as having different numbers of rRNA operon. Although rRNA operon copy number has typically not been examined in multiple individuals within a population, the high conservation of numbers within similar species from different sources argues against this. The maps provided here will be especially useful to those seeking to quantitatively characterize microbial ecosystems using 16S rRNA sequence characterizations. The number of times an organism is encountered must be adjusted for the size of its genome and especially the number of copies of the 16S rRNA gene it carries. Once 16S rRNA sequence data is available the approximate phylogenetic position of each organism can be estimated. The mappings can then be examined to obtain initial estimates of rRNA operon number and genome size by examining the neighboring phylogenetic groupings.